Thanks a bunch mate, that did help me, however it seems also that certain functions such as modifying the Tool Menu and Moveing about Sub-Palettes is a no go.
I would also like to make a small Report case incase anyone might have the same problem.
The Symmetry function and the options associated with said function don’t load correctly in the custom UI, when they’re stationed in the Top Shelf, however, by going to Preference -> Restore Custom UI, they load correctly.
Also, for some strange reason, after this process, when I choose a Menu in the Top Shelf, it highlights a menu about 3 or 4 rows away from the one I want to select to the left.
Plus, the Brush Cavity is still broken 
EDIT: Also, the Stat function breaks for some reason. It stops telling me how many poly’s and such I have, but the the Stat for how many SubTools I have works for some reason.