Im not quite sure what you’re getting at.
You might be talking about certain joints in the tree. The natural form of a tree is to ALWAYS bcome thinner the farther the branches travel from the tree.
I see at a few of the joints further out in your tree the zspheres are actually making the branch thicker than the portions closer to the trunk of the tree.
While still in zspheres I would try to take the offending joint zspheres and make them smaller.
I would also say that there is only so much that zspheres can do and that much of the look that you want to acheive will be accompleshed once it’s made a polymesh 3d object and given higher sculpting resolution.
You’ll be able to shrink and mold the offending portions of the tree then.