Fiendish McFienderson, Scourge of the 5th Dimension

[Art Van D'lay]

Here's a guy I've been working on. I'm pretty happy with the progress for the most part, but I'm having a technical problem I was hoping to get some feedback on. I'm ready to put him in some dynamic poses and build a few scenes around him, but somehow I seemed to have messed up the topology (I guess...).

I can't seem to rig him with ZSpheres or transpose for some crazy reason. I'll try and pose an arm or leg, and only part of the limb will cooperate. I've tried to transpose the subtools individually, and I've also tried Transpose Master, but both result in what's happening in the bottom photo. I also can't apply noise to any of the subtools, which is something I haven't run into before.

Can anyone help me out?